Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs4837212 | chr9:130710726 | A/G | 8.79E-5 | 502 | 1.8 | 29.1 | 38.42 | KM Plot |
KIRC | rs4860844 | chr4:68289997 | C/T | 4.63E-5 | 507 | 18.4 | 43.42 | 37.18 | KM Plot |
KIRC | rs4862527 | chr4:186351447 | C/T | 7.74E-7 | 495 | 3.53 | 37.77 | 37.03 | KM Plot |
KIRC | rs4881725 | chr11:1502754 | T/C | 8.43E-5 | 507 | 5.47 | 37.53 | 37.33 | KM Plot |
KIRC | rs4881726 | chr11:1518592 | A/G | 8.3E-5 | 508 | 5.47 | 37.37 | 37.4 | KM Plot |
KIRC | rs4881728 | chr11:1530030 | C/G | 8.08E-5 | 509 | 5.47 | 37.37 | 37.47 | KM Plot |
KIRC | rs4881733 | chr11:1494764 | T/G | 8.78E-5 | 506 | 5.47 | 37.6 | 37.33 | KM Plot |
KIRC | rs4881735 | chr11:1502401 | A/C | 8.43E-5 | 507 | 5.47 | 37.53 | 37.33 | KM Plot |
KIRC | rs4911193 | chr20:29873892 | G/C | 6.48E-5 | 503 | 11.47 | 41.28 | 36.97 | KM Plot |
KIRC | rs4954435 | chr2:137483930 | A/G | 0.000111 | 496 | 37.47 | 37.35 | 19.13 | KM Plot |
KIRC | rs4954436 | chr2:137485263 | G/A | 0.00011 | 503 | 37.47 | 37.72 | 19.13 | KM Plot |
KIRC | rs4968015 | chr16:23529426 | A/G | 6.58E-10 | 502 | 2.43 | 34.87 | 37.6 | KM Plot |
KIRC | rs5002266 | chr15:24424031 | C/G | 2.28E-8 | 497 | 37.67 | 30.32 | 3.3 | KM Plot |
KIRC | rs500450 | chr11:125518345 | C/T | 0 | 502 | 1.37 | 37.6 | 36.87 | KM Plot |
KIRC | rs511822 | chr11:125534115 | C/T | 1.22E-13 | 504 | 1.4 | 37.67 | 36.87 | KM Plot |